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DIA/SWATH Course

Course material for download



Tutorials 2017

  • Tutorial 1 - Library Generation from DDA files (pdf)

  • Tutorial 2 - Skyline DIA analysis (pdf)

  • Tutorial 3 - DIA-UMPIRE (pdf)

  • Tutorial 4 - OpenSWATH, pyProphet and TRIC (pdf)

  • Tutorial 5 - Statistical analysis with MSstats (pdf)

  • Tutorial material (was provided on a USB key) (zip)



Tutorials 2016

  • Tutorial 1 - Skyline settings (pdf)

  • Tutorial 2 - Transition list generation in Skyline (pdf)

  • Tutorial 3 - Spectral library generation in Skyline (pdf)

  • Tutorial 4 - Parameter optimisation in Skyline (pdf)

  • Tutorial 5 - Scheduling and iRTs in Skyline (pdf)

  • Tutorial 6 - Manual SRM data analysis in Skyline (pdf)

  • Tutorial 7 - Automated SRM data analysis with mProphet (pdf)

  • Tutorial 8 - Statstical SRM data analysis with MSstats (pdf)

  • Tutorial 9 - Analysis of SWATH-MS data with Skyline (pdf)

  • Tutorial material (was provided on a USB key) (zip)



Tutorials 2015

  • Tutorial 1 - Skyline settings (pdf)

  • Tutorial 2 - Transition list generation in Skyline (pdf)

  • Tutorial 3 - Spectral library generation in Skyline (pdf)

  • Tutorial 4 - Parameter optimisation in Skyline (pdf)

  • Tutorial 5 - Scheduling and iRTs in Skyline (pdf)

  • Tutorial 6 - Manual SRM data analysis in Skyline (pdf)

  • Tutorial 7 - Automated SRM data analysis with mProphet (pdf)

  • Tutorial 8 - Statstical SRM data analysis with MSstats (pdf)

  • Tutorial 9 - Analysis of SWATH-MS data with Skyline (pdf)

  • Tutorial material (was provided on a USB key) (zip)



Tutorials 2014

  • Tutorial 1 - Skyline settings (pdf)

  • Tutorial 2 - Transition list generation in Skyline (pdf)

  • Tutorial 3 - Spectral library generation in Skyline (pdf)

  • Tutorial 4 - Parameter optimisation in Skyline (pdf)

  • Tutorial 5 - Scheduling and iRTs in Skyline (pdf)

  • Tutorial 6 - Manual SRM data analysis in Skyline (pdf)

  • Tutorial 7 - Automated SRM data analysis with mProphet (pdf)

  • Tutorial 8 - Statstical SRM data analysis with MSstats (pdf)

  • Tutorial exercises with solutions (pdf)

  • Tutorial material (was provided on a USB key) (zip)



Tutorials 2013

  • Tutorial 1 - Skyline settings (pdf)

  • Tutorial 2 - Transition list generation in Skyline (pdf)

  • Tutorial 3 - Spectral library generation in Skyline (pdf)

  • Tutorial 4 - Parameter optimisation in Skyline (pdf)

  • Tutorial 5 - Scheduling and iRTs in Skyline (pdf)

  • Tutorial 6 - Manual SRM data analysis in Skyline (pdf)

  • Tutorial 7 - Automated SRM data analysis with mProphet (pdf)

  • Tutorial 8 - Statstical SRM data analysis with MSstats (slides, R-script, input, skyr)

  • Tutorial exercises with solutions (pdf)

  • Tutorial material (was provided on a USB key) (zip)